Here is a great site for learning about skeletons called eskeletons. It is a site that allows the learner to examine different parts of different types of skeletons. The technology is not 3D but is very effective. Parts of the different skulls or bones are highlighted as the learner clicks from part to part.
A good demonstration of teaching declarative knowledge with words, images and color cues. The design is simple but effective and allows the learner to explore and compare and constrast on his or her own.
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